Jorge R. Ibarra Caballero
Colorado State University
Fort Collins, Colorado, United States
Jane E. Stewart, Colorado State University, Department of Agricultural Biology, Fort Collins, CO, United States
Associate Professor
Colorado State University
Fort Collins, CO, USA
Patrick I. Bennett, USDA Forest Service Rocky Mountain Research Station
USDA Forest Service – Rocky Mountain Research Station, Moscow, ID 83843, USA
Moscow, Idaho, United States
John Hanna
3USDA Forest Service – Rocky Mountain Research Station, Moscow, ID 83843, USA
Moscow, Idaho, United States
Rubén Damián Elías-Román
Universidad de Guanajuato
Irapuato, Guanajuato, Mexico
Ned Klopfenstein
Forest Service USDA
Moscow, Idaho, United States
Mee-Sook Kim, USDA Forest Service, Pacific Northwest Research Station, Corvallis, OR, United States
USDA Forest Service
Corvallis, Oregon, United States
Armillaria root disease of trees and shrubs is caused by Armillaria spp. that are found globally across in temperate and tropical ecosystems. Recent genomic studies of Armillaria species have discovered genes associated with host specialization, lifestyle, and other enzymatic activities that vary across ecosystems and continents. Armillaria mexicana is a recently discovered destructive pathogen of diverse woody plants in forests and horticultural settings currently known to occur in Mexico. Recent phylogenetic analyses have determined that A. mexicana is basal to the other Northern Hemisphere Armillaria spp. We performed whole genome sequencing and analyses to characterize A. mexicana for comparisons with other North American Armillaria spp. The genome size of A. mexicana was smaller than other Armillaria spp. at 49 Mb compared to 70 Mb, 73, and 55 Mb for A. mellea, A. altimontana, and A. solidipes, respectively. We compared the carbohydrate degrading enzymes, secondary metabolites, and secretomes across these four species. We compared the carbohydrate degrading enzymes, secondary metabolites, and secretomes across these four species, and A. mexicana had a similar number of these genes compared to A. mellea, but larger numbers compared to A. altimontana, and A. solidipes. These comparisons enhance our understanding of the pathogenicity of Armillaria spp. and their host interactions.